PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D02390.1.p
Common NameEUGRSUZ_D02390, LOC104442190
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 298aa    MW: 33737.8 Da    PI: 9.0078
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D02390.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.9e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+ Ed llv++++ +G g+W++ +++ g+ R++k+c++rw +yl
  Eucgr.D02390.1.p 14 RGPWTPREDSLLVNYIQAHGEGHWRSLPKKAGLLRCGKSCRLRWMNYL 61
                      89******************************99************97 PP

2Myb_DNA-binding53.45.7e-1767112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
  Eucgr.D02390.1.p  67 RGNITPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                       7999******************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.039961IPR017930Myb domain
SuperFamilySSF466892.57E-3011108IPR009057Homeodomain-like
SMARTSM007171.0E-121363IPR001005SANT/Myb domain
PfamPF002491.1E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-231568IPR009057Homeodomain-like
CDDcd001673.07E-101661No hitNo description
PROSITE profilePS5129426.81762116IPR017930Myb domain
SMARTSM007172.1E-1666114IPR001005SANT/Myb domain
PfamPF002491.9E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2669116IPR009057Homeodomain-like
CDDcd001673.10E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGRAPCCAKV GLHRGPWTPR EDSLLVNYIQ AHGEGHWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKRLLRNQ  120
DNHPTHRPPS TKRRKTTAES TKESTKKSKH NNKKSPNRAS AEATERPKVH LPKAIRVTTS  180
FSLPRNDSFD CNTAISWSSS QGGLLDREVA HVARSDETAG LYGFFVGDPQ DRGHHEFFNG  240
ANDDSTANPH RLECPSEEEP GKDQNGTLEN LYEEYLQLLR TEDDLVQLDS FAESLLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D02390.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053846.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A059CJT90.0A0A059CJT9_EUCGR; Uncharacterized protein
STRINGVIT_15s0046g00170.t011e-104(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.15e-67myb domain protein 5